PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03169.20
Common NameJCGZ_21046, LOC105645184
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 288aa    MW: 32602.4 Da    PI: 6.26
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03169.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192978255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++  +g+WvAeIr+p++   r r +lg+f taeeAa a+++a+++l+g
  Jcr4S03169.20 29 EYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATAEEAAMAYDEAARRLYG 78
                   69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.14E-312888No hitNo description
PROSITE profilePS5103222.7612986IPR001471AP2/ERF domain
SMARTSM003809.7E-382992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-302987IPR001471AP2/ERF domain
PfamPF008474.5E-132978IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-212987IPR016177DNA-binding domain
PRINTSPR003673.0E-103041IPR001471AP2/ERF domain
PRINTSPR003673.0E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MENCRKSPLK PWKKGPTRGK GGPQNAMCEY RGVRQRTWGK WVAEIREPKK RSRLWLGSFA  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLQP SLINNKSNNS NKFKWIPSKN FISMFPSSCG  120
LLNIHAQPSV HVIHQRLQEF KKNSNVSSSS SSDSKIIITE KPHVENPPLM EKQVEITTSE  180
KPQIDLNEFL QQMGIIKVDR QQEEESDTTE SCLVQESQVK EDEFYNNYNN NNNLGALADK  240
SFNWDSLIDM HGIGGGGDYD QGVESSGTLQ VYDAQDELAA FPASIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-193086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086103.10.0PREDICTED: dehydration-responsive element-binding protein 2F
SwissprotQ9SVX57e-83DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A067JT610.0A0A067JT61_JATCU; Uncharacterized protein
STRINGPOPTR_0016s05360.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-66ERF family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]